Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
4QGB Chain:A ((2-216))
--------------VDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMVPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
4QGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110981 for 1791 contacts (-62.0/contact) +
2D Compatibility (PS) -23529 + (NN) -15351 + (LL) 1660
1D Compatibility (HY) -18000 + (ID) 5900
Total energy: -172101.0 ( -96.09 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_4QGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGB-query.scw
PDB file :
Tito_Scwrl_4QGB.pdb
: