Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA
2ZJQ Chain:Q ((5-89))
-----DILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFIGQRNDRKKAIVRL-AEGQSIE----
General information:
TITO was launched using:
RESULT:
Template:
2ZJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9371 for 516 contacts (-18.2/contact) +
2D Compatibility (PS) -8851 + (NN) 2556 + (LL) 792
1D Compatibility (HY) -6800 + (ID) 2000
Total energy: -23674.0 ( -45.88 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2ZJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZJQ-query.scw
PDB file :
Tito_Scwrl_2ZJQ.pdb
: