Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKANEIRDLTTAEIEQKVKSLKEELFNLR-FQLATGQLENTARIREVRKAIARMKTVIREREIAANK
1K9M Chain:W ((3-59))
LHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTI----------
General information:
TITO was launched using:
RESULT:
Template:
1K9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3812 for 304 contacts (-12.5/contact) +
2D Compatibility (PS) -6243 + (NN) -3797 + (LL) 1088
1D Compatibility (HY) -3600 + (ID) 1500
Total energy: -17864.0 ( -58.76 by residue)
QMean score : 0.783
(partial model without unconserved sides chains):
PDB file :
Tito_1K9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K9M-query.scw
PDB file :
Tito_Scwrl_1K9M.pdb
: