Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG
5GAD Chain:K ((3-142))
---TFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI--
General information:
TITO was launched using:
RESULT:
Template:
5GAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46416 for 946 contacts (-49.1/contact) +
2D Compatibility (PS) -15488 + (NN) -10469 + (LL) 288
1D Compatibility (HY) -12800 + (ID) 4100
Total energy: -88985.0 ( -94.06 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_5GAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAD-query.scw
PDB file :
Tito_Scwrl_5GAD.pdb
: