Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFAKTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETLSSPLYKKQFEDELKKAAKDTAKESE
2LNM Chain:A ((3-54))
-------------------------------------------------------------------------------------EVISKIMENPDVAM----------------AFQNPRVQAALMECSENPMN---IMKYQNDKEVMDVFNKIS-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19302 for 314 contacts (-61.5/contact) +
2D Compatibility (PS) -5459 + (NN) -1967 + (LL) 9744
1D Compatibility (HY) -4400 + (ID) 550
Total energy: -21934.0 ( -69.85 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2LNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LNM-query.scw
PDB file :
Tito_Scwrl_2LNM.pdb
: