Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLDDNEMSFLNHVLEKEIKYAQNEQDQKRAKELNEVYELLL
5BYM Chain:A ((231-299))
------YLLAELFNRLSNELCQLSCLKFSSNVV---EKFIKKL---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5BYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9021 for 169 contacts (-53.4/contact) +
2D Compatibility (PS) -3638 + (NN) -2029 + (LL) 3916
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -15522.0 ( -91.85 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_5BYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5BYM-query.scw
PDB file :
Tito_Scwrl_5BYM.pdb
: