Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKND-QIVFEKTKNIAHDINQMQNQQEIIDY-------LFRQDSLTLNQLKHY--YSEPSLPLQ------FLVKV----AVLCMFI-----SMTLASFLFIQAKEVFTNTILSDISPAVFSIF--TVICIFM-----TYTKIIKKGNKNKGKASLNQRSEFYEKNK------LINTIL------------YKKYKMDQQNIQANK------HTASDNEDSMNFSAVLNH-----VLTISKNDKELLGYLDTRDNAMLSQLKAYFSTRPFSLPHYMSLMFCGSI---IVVYATSLFSGQINYIDIPHIFIFLLLIIFLKILIDLIKLLNISRKGQLHTVLHFAQRAEYLRM---RGVIDFILTE-------RYNKKIM---------------
4ZOX Chain:A ((53-431))MSNNSLTYFDKHTDSVFAIGHHPNLPLVCTGGGDNLAHLWTSHSQPPKFAGTLTGYGESVISCSFTSEGGFLVTADMSGKVLVHMGQKGGAQWKLASQMQEVEEIVWLKTHPTIARTFAFGATDGSVWCYQINEQDGSLEQLMSGFVHQQD----CSMGEFINTDKGENTLELVTCSLDSTIVAWNCFTGQQLFKITQAEIKGLEAPWISLSLAPETLTKGNSGVVACGSNNGLLAVINCNNGGAILHLSTVIELKPEQDELDASIESISWSSKFSLMAIGLVCGEILLYDTSAWR-------VRHKFV--LEDSVTKLMFDNDDLFASCINGKVYQFNARTGQEKFVCVGHNMGVLDFILLHPVANTGTEQKRKVITAGDEGVSLVFEVPN


General information:
TITO was launched using:
RESULT:

Template: 4ZOX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1478 -222189 -150.33 -766.17
target 2D structure prediction score : 0.20
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -150.33
2D Compatibility (Sec. Struct. Predict.) : 0.20
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.083

(partial model without unconserved sides chains):
PDB file : Tito_4ZOX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ZOX-query.scw
PDB file : Tito_Scwrl_4ZOX.pdb: