Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPQTEQIHQHSVLRDIIRSRRSIRKFKQEPVPSAVILDMLETAKYAPNHRVTEPWRFIYVSSETGKANL---------INTFAAFSKKSKPDMTEEKLQNFKNTLGRVPGFLLVVFQEDENERARDDDFAATSSLIQNLQLLAWEKGIGMVWKSGKIL-YDKEVHQAFGLQDNERFAAIIQTGYPDE---APEVKKRTPIRDRFTEM
3GB5 Chain:A ((46-244))-PEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEI----------------------KEYLDTAPVLILIFKQV----------YNEISVSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRK----------


General information:
TITO was launched using:
RESULT:

Template: 3GB5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 628 -94453 -150.40 -625.52
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -150.40
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.392

(partial model without unconserved sides chains):
PDB file : Tito_3GB5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GB5-query.scw
PDB file : Tito_Scwrl_3GB5.pdb: