Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPKMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSQKQKRKLRKSA--VVSAGDFKRIKQMLANIK
1Y2K Chain:A ((184-220))-------------------------------IFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLK


General information:
TITO was launched using:
RESULT:

Template: 1Y2K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 25 1906 76.22 54.44
target 2D structure prediction score : 0.80
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : 76.22
2D Compatibility (Sec. Struct. Predict.) : 0.80
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.748

(partial model without unconserved sides chains):
PDB file : Tito_1Y2K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Y2K-query.scw
PDB file : Tito_Scwrl_1Y2K.pdb: