Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
4DR5 Chain:R ((16-85))
--------PSRKAKVKATLGEFDLR-----DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKL-
General information:
TITO was launched using:
RESULT:
Template:
4DR5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1923 for 422 contacts (-4.6/contact) +
2D Compatibility (PS) -7356 + (NN) -2879 + (LL) 1180
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -15528.0 ( -36.80 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_4DR5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR5-query.scw
PDB file :
Tito_Scwrl_4DR5.pdb
: