Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------------MTAAPTAGGVVTSGVGVAGVGVGLL-GMFGPVRVVHVGWLLPLS---GVHIELDRLGGFFMALTGAVAAPVGCYLIGYVRREHLGRVPMAVVPLFVAAMLLVPAAGSVTTFLLAWELMAIASLILVLSEHARPQVRSAGLWYAVMTQLGFIAILVGLVVLAAAGGSDRFAGLGAVCDGVR-------AAVFMLTLVGFGSKAGLVPLHAWLPRAHPEAPSPVSALMSAA-MVNLGIYGIVRFDLQLLGPGPRWWGLALLAVGGTSALYGVLQASVAADLKRLLAYSTTENMGLITLALGAATLFADTGAYGPASIAAAAAMLHMIAHAAFKSLAFMAAGSVLAAT-GLRDLDLLGGLARRMPATTVFFGVAALGACGLPLG-AGFVSEWLLVQSLIHAAPGHDPIVALTTPLAVGVVALATGLSVAAMTKAFGIGFLARPRSTQAEAAREAPASMRAGMAIAAGACLVLAVAPLLVAPMVRRAAATLPAAQAVKFTGLGAVVRLPAMSGSIAPGVIAAAVLAAALAVAVLARWRFRRRPAPARLPLWACGAADLTVRMQYTATSFAEPLQRVFGDVLRPDTDIEVTHTAESRYMAERITYRTAVADAIEQRLYTPVVGAVAAMAELLRRAHTGSVHRYLAYGALGVLIVLVVAR-- |
| 3RKO Chain:B ((1-612)) | MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQLPLQTWLADA-MAGPTPVSALIHAATMVTAGVYLIART-HGLFLMTPEVLHL-VGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQ--------------AWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAM------------ANGHINLMVAGLVGAFMTSLY-TFRMIFIVFHGKEQIHAHAVKGVTHSLPLIVLLILSTF--VGALIVPPLQGVLPQTTELAHG-------------------SMLTLEITSGVVAVVGILLAAWLWLGKR-----------TLVTSIANSAPGRLLSTWWYNAWG----------FDWLYDKVFVKPFLGIAWLLKRDPLNSMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -545804 for 4954 contacts (-110.2/contact) +
2D Compatibility (PS) -58492 + (NN) -22583 + (LL) 3980
1D Compatibility (HY) -38000 + (ID) 6600
Total energy: -667499.0 ( -134.74 by residue)
QMean score : 0.323
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