Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNANFSILVDFAAGGLVLASVLIVWRRDLRAIVRLLA---WQGAALAAIPLLRGIRDN--------DRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPA---------AFAVVLIALFVMTTRLHAVSQAAGFLMLDNGIAATAFLLTAGVPLIVELGA----SLDVLFAVIVIGVLTGRLRRIFGDADLDKLRELRD
5A63 Chain:C ((2-244))
-GAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSFGIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVVGSHLLTSGLTFLNPWYEASLLPIYAVTVSMGLWAFITAGGSLRSIQRSLL
General information:
TITO was launched using:
RESULT:
Template:
5A63.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176209 for 1655 contacts (-106.5/contact) +
2D Compatibility (PS) -23624 + (NN) -16705 + (LL) 208
1D Compatibility (HY) -6800 + (ID) 1750
Total energy: -224880.0 ( -135.88 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_5A63.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A63-query.scw
PDB file :
Tito_Scwrl_5A63.pdb
: