Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSDTLATKLPWSDWLSRQRWYAGRNRELATVKPGVVVALRHNLDLVLVDVTYTDGATERYQVLVGWDFEPASEYGTKAAIGVADDRTGFDALYDVAGPQFLLSLIVSSAVCGTSTGEVTFTREPDVELPFAAQPRVCDAEQSNTSVIFD---RRAILKVFRRVS-SGINPDIELNRVLTRAGNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEANAAEGWAMATASVRDLFAEGDLYAHEVGGDFAGESYRLGEAVASVHATLADSLGTAQATFPVDRMLARLSSTVAVVPELR-EYAPTIEQQFQKLAA---EAITVQRVHGDLHLGQVLRTPES-WLLIDFEGEPGQPLDERRAPDSPLRDVAGVLRSFEYAAYGPLVDQATDKQLAARAREWVERNRAAFCDGYAVASGIDPRDSALLLGAYELDKAVYETGYETRHRPGWLPIPLRSIARLTAS |
| 2PPQ Chain:A ((25-277)) | -------------------------------------------------------------------------------------------------------------------------------------TSYKGIAE---NSNFLLHTTKDPLILTLYEK--KNDLPFFLGLMQHLAAKGLS-CPLPLPRKDGELLG-----ELSGRPAALISFLEGMWLR-----------------------KPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYF---------ACNDLLAYDVSICLNAWCFEK----------------DGAYNVTKGKALLEGYQSVRPLSEA-ELEALPLLSRGSALRFF------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66260 for 1763 contacts (-37.6/contact) +
2D Compatibility (PS) -24190 + (NN) 2500 + (LL) 13352
1D Compatibility (HY) -9200 + (ID) 1850
Total energy: -85648.0 ( -48.58 by residue)
QMean score : 0.315
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