Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVTGGVRSGKSTHAEALLGDAADVVYVAPGRPAAGSDPDWDARVALHRARRPPTWLTVE-------TADVATALSEARSPVLVDCLGTWLTAIMDGEALWSAATADVYAVLEARLDG----LCAALTGLPTAIV-VTNEVGLGVVPSHSSGVLFRDLLGTINRRVAAVCDEVHLVIAGRVLKL
1C9K Chain:C ((2-179))
--ILVTGGARSGKSRHAEALIGDAPQVLYIATSQIL------------HHKDGRPAHWRTA-RHLDTLITADLAP-----DDAILLECITTMVTNLLFALG---DPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADEVWLVVSGIGVKI
General information:
TITO was launched using:
RESULT:
Template:
1C9K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95269 for 1052 contacts (-90.6/contact) +
2D Compatibility (PS) -16301 + (NN) -4775 + (LL) 1568
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -130977.0 ( -124.50 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1C9K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C9K-query.scw
PDB file :
Tito_Scwrl_1C9K.pdb
: