Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIMYNYPAMLGHAGDMAGYAGTLQSLGAEI-AVEQAALQSAWQGDTGITYQAWQAQWNQAMEDLVRAYHAMSSTHEANTMAMMARDTAEAAKWGG
3J8B Chain:E ((131-771))
----LYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLW---GKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRT--------
General information:
TITO was launched using:
RESULT:
Template:
3J8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17347 for 561 contacts (-30.9/contact) +
2D Compatibility (PS) -8573 + (NN) -2072 + (LL) 788
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -32554.0 ( -58.03 by residue)
QMean score : 0.146
(partial model without unconserved sides chains):
PDB file :
Tito_3J8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J8B-query.scw
PDB file :
Tito_Scwrl_3J8B.pdb
: