Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFNNTRYTHID---PAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSYQNFIRST
4XJC Chain:A ((1-175))
MILSGKTISEKLTEKELEITPLTEEQIQPASVDLRLGPHFVTIDDSKEAVISFERPIRYREWTTS------DETIVLPPHTFLLATTMETVKLPNHLTAFVEGRSSVGRLGLFIQN-AGWVDPGFNGQITLELFNANRLPIELPIGRRICQLVFAEVTGEV-APY-----QGKYLFQKGATMSEIYKD-----
General information:
TITO was launched using:
RESULT:
Template:
4XJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79726 for 1247 contacts (-63.9/contact) +
2D Compatibility (PS) -18558 + (NN) -7649 + (LL) 1096
1D Compatibility (HY) -14400 + (ID) 3400
Total energy: -122637.0 ( -98.35 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4XJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XJC-query.scw
PDB file :
Tito_Scwrl_4XJC.pdb
: