Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVNDGVDQMGAEPDIMEFVEQMGGYFESRSLTRLAGRLLGWLLV-CDPERQSSEELATALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQRTGEDD
4NB5 Chain:A ((15-159))
--------------DIMEFVEQMGGYFESRSLTRLAGRLLGWLLVCDPER-QSSEELATALAASSGGISTNARMLIQFGFIERLAVAGDRRTYFRLRPNAFAAGERERIRAMAELQDLADVGLRALGDAPPQRSRRLREMRDLLAYMENVVSDALGRYSQ------
General information:
TITO was launched using:
RESULT:
Template:
4NB5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77297 for 971 contacts (-79.6/contact) +
2D Compatibility (PS) -16129 + (NN) -12201 + (LL) 456
1D Compatibility (HY) -18400 + (ID) 7000
Total energy: -130571.0 ( -134.47 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4NB5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NB5-query.scw
PDB file :
Tito_Scwrl_4NB5.pdb
: