Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MILDMFRLDDKVAVITGGGRGLGAAIALAFAQAGADVLIASRTSSELDAVAEQIRAAGR-RAHTVAADLAHPEVTAQLAGQAVGAFGKLDIVVNNVGGTMPNTLLSTST-KDLADAFAFNV-GTAHALTVAAVPLMLEHSGGGSVINISSTMGRLAAR-GFAAYGTAKAALAHYTRLAALDLCPR-VRVNAIAPGSILTSALEVVAANDELRAPMEQATPLRRLGDPVDIAAAAVYLASPAGSFLTGKTLEVDGGLTFPNLDLPIPDL
3RIH Chain:A ((36-286))
----MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANA-GIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLT--ASGRGRVILTSSITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGL--VDMGEEYISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVLPE--------
General information:
TITO was launched using:
RESULT:
Template:
3RIH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146021 for 2106 contacts (-69.3/contact) +
2D Compatibility (PS) -26781 + (NN) -11301 + (LL) 1216
1D Compatibility (HY) -16000 + (ID) 4900
Total energy: -203787.0 ( -96.76 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3RIH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RIH-query.scw
PDB file :
Tito_Scwrl_3RIH.pdb
: