Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
1R2Y Chain:A ((134-273))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
1R2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65483 for 1021 contacts (-64.1/contact) +
2D Compatibility (PS) -14161 + (NN) -5707 + (LL) 1372
1D Compatibility (HY) -5600 + (ID) 2400
Total energy: -91979.0 ( -90.09 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1R2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R2Y-query.scw
PDB file :
Tito_Scwrl_1R2Y.pdb
: