Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDH-----AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGV-------PYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
2B4Y Chain:A ((22-270))
--IVIISGAGVSAESGV--------GYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL--------
General information:
TITO was launched using:
RESULT:
Template:
2B4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119944 for 1738 contacts (-69.0/contact) +
2D Compatibility (PS) -23999 + (NN) -14197 + (LL) 1084
1D Compatibility (HY) -18400 + (ID) 4700
Total energy: -180156.0 ( -103.66 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_2B4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B4Y-query.scw
PDB file :
Tito_Scwrl_2B4Y.pdb
: