Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGS-AVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAV-GLDVQIID-GEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIA---SGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
5A5W Chain:A ((1-239))
----MIIPALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRAGTLAGSNVSLYEEVCARY--PQIAFQSSGGIGDIDD---IAALRGTGVRGVIVGRALLEGKFTVKEAI-----
General information:
TITO was launched using:
RESULT:
Template:
5A5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119986 for 1926 contacts (-62.3/contact) +
2D Compatibility (PS) -25450 + (NN) -13256 + (LL) 1444
1D Compatibility (HY) -24400 + (ID) 4200
Total energy: -185848.0 ( -96.49 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_5A5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A5W-query.scw
PDB file :
Tito_Scwrl_5A5W.pdb
: