Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAALREPGIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPKPAR
1JCM Chain:P ((34-249))
-------------------------------------PSTRHFYDALQGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAI-SVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDLCDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAV-----------------
General information:
TITO was launched using:
RESULT:
Template:
1JCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126014 for 1851 contacts (-68.1/contact) +
2D Compatibility (PS) -23629 + (NN) -11211 + (LL) 4012
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -177642.0 ( -95.97 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1JCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JCM-query.scw
PDB file :
Tito_Scwrl_1JCM.pdb
: