Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLSAAVVAIDGPAGTGKSSVSRRLARELGARFLDTGAMYRIVTLAVLRAGADPSDIAAVETIASTVQMSLGYDPDGDSCYLAGEDVSVEIRGDAVTRAVSAVSSVPAVRTRLVELQRTMAEGPGSIVVEGRDIGTVVFPDAPVKIFLTASAETRARRRNAQNVAAGLADDYDGVLADVRRRDHLDSTRAVSPLQAAGDAVIVDTSDMTEAEVVAHLLELVTRRSEAVR
3AKD Chain:A ((4-208))
-------IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRA---WVNRRLKEVPPPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQA-----YEEVLRDLLRRD------SAP----APDALVLDTGGMTLDEVVAWVLAHIRR------
General information:
TITO was launched using:
RESULT:
Template:
3AKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117286 for 1648 contacts (-71.2/contact) +
2D Compatibility (PS) -21606 + (NN) -11897 + (LL) 2360
1D Compatibility (HY) -14400 + (ID) 4250
Total energy: -167079.0 ( -101.38 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3AKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKD-query.scw
PDB file :
Tito_Scwrl_3AKD.pdb
: