Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGVD--G--SVCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
2LGH Chain:A ((2-136))
-------KISIEAHIEQEIEAVWWAWNDPDCIARWNAA-SSDW--HTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAPTRLSFVMDDG------------REVDVQFASEP-GGTWVQETFDAETSH------TPAQQ--QAGWQGILDNFKRYVEAAG--
General information:
TITO was launched using:
RESULT:
Template:
2LGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54317 for 924 contacts (-58.8/contact) +
2D Compatibility (PS) -13627 + (NN) -2060 + (LL) 1060
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -72944.0 ( -78.94 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_2LGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LGH-query.scw
PDB file :
Tito_Scwrl_2LGH.pdb
: