Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED
2LPD Chain:A ((16-84))
-TQGPGSMDDELYFVVRNNEGQYSVWMDGRSLPAGWETVGEPATKQQCLQRIEQLWTDMVPASVREHLNQ-
General information:
TITO was launched using:
RESULT:
Template:
2LPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29603 for 388 contacts (-76.3/contact) +
2D Compatibility (PS) -7770 + (NN) -7739 + (LL) 132
1D Compatibility (HY) -3600 + (ID) 1200
Total energy: -49780.0 ( -128.30 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2LPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LPD-query.scw
PDB file :
Tito_Scwrl_2LPD.pdb
: