Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIDIVTIFPACLDPLRQ-SLPGKAIESGLVDLNVHDLRRWTHDVHHSVDDAPYGGGPGMVMKAPVWGEAL---DEICSSETLLIVPTPAGVLFTQATAQRWTTESHLVFACGRYEGIDQRVVQDAARRMRVEEVSIGDYVLPGGESAAVVMVEAVLRLLAGVLGNPASHQDDSHSTGLDGLLEGPSYTRPASWRGLDVPEVLLSGDHARIAAWRREVSLQRTRERRPDLSHPD
4YVI Chain:A ((21-243))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEID----EEWSIGDYVLTGGELPAMTLIDAVARFIPGVL--------DSFA---DGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPEL----
General information:
TITO was launched using:
RESULT:
Template:
4YVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123705 for 1504 contacts (-82.3/contact) +
2D Compatibility (PS) -22796 + (NN) -7453 + (LL) 268
1D Compatibility (HY) -20400 + (ID) 4500
Total energy: -178586.0 ( -118.74 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_4YVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVI-query.scw
PDB file :
Tito_Scwrl_4YVI.pdb
: