Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSWNHQSVEIAVRRTTVPSPNLPPGFDFTDPAIYAERLPVAEFAELRSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRFVMLNMDAPHHTRLRKIISRGFTPRAVGRLHDELQERAQKIAAEAAAAGSGDFVEQVSCELPLQAIAGLLGVPQEDRGKLFHWSNEMTG-----NEDPEYAHIDPK-ASSAELIGYAMKMAEEKAKNPADDIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELYKKVRPET---AADEIVRWATPVTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFDEEVFQDPFTFNILRNPNPHVGFGGTGAHYCIGANLARMTINLIFNAVADHMPDLKPISAPERLRSGWLNGIKHWQVDYTGRCPVAH |
4RM4 Chain:A ((26-394)) | --------------------------------------PFPWYESMRKDAPVSFDEEN----------QVWSVFLYDDVKKVVGDKELFSS----CM-------GNS--------IINMDPPKHTKIRSVVNKAFTPRVMKQWEPRIQEITDELIQKFQGRSEFDLVHDFSYPLPVIVISELLGVPSAHMEQFKAWSDLLVSTPKDKSEEAEKAFLEERDKCEEELAAFFAGIIEEKRNKPEQDIISILVE----GEKLSGEELIPFCTLLLVAGNETTTNLISNAMYSILETPGVYEELRS-HPELMPQAVEEALRFRAPAPVLRRIAKRDTEIGGHLIKEGDMVLAFVASANRDEAKFDRPHMFDIRRHPNPHIAFGH-GIHFCLGAPLARLEANIALTSLISAFPHMECVSITP-IENSVIYGLKSFRV---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171737 for 2821 contacts (-60.9/contact) +
2D Compatibility (PS) -37853 + (NN) -21498 + (LL) 3160
1D Compatibility (HY) -28400 + (ID) 5850
Total energy: -262178.0 ( -92.94 by residue)
QMean score : 0.467
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