Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVTVTLVDDFDGSGAADETVEFGLDGVTYEIDLSTKNATKLRGDLKQWVAAGRRVGGRRRGRSGSG--RGRGAIDREQSAAIREWARRNGHNVSTRGRIPADVIDAYHAAT
4GKY Chain:A ((32-119))
------------------------LPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYA--
General information:
TITO was launched using:
RESULT:
Template:
4GKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10227 for 429 contacts (23.8/contact) +
2D Compatibility (PS) -8777 + (NN) -1921 + (LL) 1728
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -4093.0 ( -9.54 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_4GKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKY-query.scw
PDB file :
Tito_Scwrl_4GKY.pdb
: