Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
4M3D Chain:A ((23-214))
----------------------DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
4M3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98666 for 1394 contacts (-70.8/contact) +
2D Compatibility (PS) -21110 + (NN) -17442 + (LL) 920
1D Compatibility (HY) -24800 + (ID) 9600
Total energy: -170698.0 ( -122.45 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4M3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M3D-query.scw
PDB file :
Tito_Scwrl_4M3D.pdb
: