Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA
2L8D Chain:A ((10-20))
-----------------------------------------------YADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTE
General information:
TITO was launched using:
RESULT:
Template:
2L8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -560 for 23 contacts (-24.3/contact) +
2D Compatibility (PS) -1268 + (NN) -1330 + (LL) 2768
1D Compatibility (HY) -1600 + (ID) 200
Total energy: -2190.0 ( -95.22 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_2L8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L8D-query.scw
PDB file :
Tito_Scwrl_2L8D.pdb
: