Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTRVLRGLVAALPLFLAACSDSAPSSEEIARLLAERGFDKPACASSTLFKTFPVTLSDSFSGPGPAKGNAAVYDALVGVGLLRRDG-----DSYDLTPAGREDYKPESKAFCYSSGFDVSVRSVDPAKPDDYGPAVEKGWLVTVEVKPREVKDWAKNPEVLKQASLTTLQQITQPQVGQVSLVKPRGEEGYKLVNTRFSPRQGFHFNQAW |
2JTV Chain:A ((24-62)) | ------------------------------------------------------------------GSREQKPFEDLVDLGWLKRSSVDSRATHYQITERGTSAALRS------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2JTV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3391 for 185 contacts (-18.3/contact) +
2D Compatibility (PS) -3564 + (NN) -2089 + (LL) 9024
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -2820.0 ( -15.24 by residue)
QMean score : 0.376
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