Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MNASTSPLPASDQTLRGILLICAAVFLFASHDGLSKFLSGFYPIVMVVWARYLVHTLLMVAVFVP-RNGLAVIRSRRPLMQL-ARALCLIGTSLFFTTGLRYLPLAEATAVNFLAPLLVTALSVPLLKEKVSLGQWLAVLTGFIGVLFIVRPGGALFTPAALFPLGSALCFGLYQLLTRMLANSDSPTTSNFLAGIFNTLIMSLLVPFFWQTPSLLHGLMM---------IALGGCGM-----GGHLLLTQAFRHAPPATLAPFSYGQIIFAGLLGLLVFG-HVPD----------AWALLGIL--VICASGLVVAWRRGR------------------------------------------------------------------- |
| 1YU0 Chain:A ((5-380)) | VQFRGGTTAQHATFTGAAREITVDTDKNTVVVHDGAT---AGGFPLAR--------HDLVKTAFIKADKSAVAFTRTGNATASIKAGTIVEVNGKLVQFTADTAITMPALTAGTDYAIYVCDDGTVRADSNFSAPTGYTSTTARKVGGFHYA-PGSNAAAQAGGNTTAQINEYSLWDIKFRPAALD--PRGMTLVAGAFWADIYLLGVNHLTDGTSKYNVTIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGGTDVPTTGVNGTGATSAWNIFTSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGSRAALWYSGPSFSFAFFGARGVCDHLIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YU0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -282622 for 2086 contacts (-135.5/contact) +
2D Compatibility (PS) -28351 + (NN) 8078 + (LL) 1612
1D Compatibility (HY) 4000 + (ID) 2500
Total energy: -299783.0 ( -143.71 by residue)
QMean score : 0.024
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