Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNVFSLLLAREARLLFRRPAELANPLVFFAIVIALFPLAVGPESQLLQTLSPGLVWVAALLAVLLSLEGLFRSDFEDGSMEQWVLSPHPLALLVLAKVLAHW----------LFSGLALVLMSPLFALMLGLPARCIPVLLLSLLLGTPVLSLLGAVGAALTVGLKRGGLLLALLILPLYIPVLILGSGALQASLQGLPSSGHLLWLASLTALALTLT-----PFAIAAGLKISVGE-
3WI3 Chain:A ((8-275))
YSDPKEYIESKYYDALFS----IHTPLAYFVKS-NLVRLKNTCRTKYGS--DSYKIAYQAMLQKFLLSIVQFKDRHDNRLLLE--PFSSPIADEKRKNCLTKFVIQDENKNSSTIADLCVVLKSREIKLQILLLLEIIGLNDLDWNFRDF------DYCEQLDLYLDRACILDILLSSE---------TGTIQEHKKNILDKSKEASLVGFINYVLIPYFNKKVPHAVEFIIQKLKGPS
General information:
TITO was launched using:
RESULT:
Template:
3WI3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198376 for 1474 contacts (-134.6/contact) +
2D Compatibility (PS) -21173 + (NN) -15093 + (LL) 2416
1D Compatibility (HY) -7200 + (ID) 1800
Total energy: -241226.0 ( -163.65 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_3WI3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WI3-query.scw
PDB file :
Tito_Scwrl_3WI3.pdb
: