Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGG---EPPAAGRRLAGLENGALGERLLQRFAQPLQGLEADRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQ-LARRELQVLIPLNGMLDNLVRNSHKLDLES
3T3N Chain:A ((333-444))
-AKMAIKPGDTVILSSSPIPGNEEAVNRVINRLYALGAYVLYPPTYKVHASG---------------------HASQEELKLILNLTTP------RFFLPWHGEVRHQMNFKWLAESMSRPPEKTLIGENGAVYRLTRETFEKVGEV
General information:
TITO was launched using:
RESULT:
Template:
3T3N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4649 for 548 contacts (8.5/contact) +
2D Compatibility (PS) -11802 + (NN) -7544 + (LL) 2180
1D Compatibility (HY) -4000 + (ID) 1800
Total energy: -18317.0 ( -33.43 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_3T3N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T3N-query.scw
PDB file :
Tito_Scwrl_3T3N.pdb
: