Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRD-SGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
3O4H Chain:A ((92-147))
-------------------------------------------------------------------LFKVNTSRPGEEQRLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG
General information:
TITO was launched using:
RESULT:
Template:
3O4H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20992 for 292 contacts (-71.9/contact) +
2D Compatibility (PS) -5933 + (NN) -4470 + (LL) 3184
1D Compatibility (HY) -2000 + (ID) 350
Total energy: -30561.0 ( -104.66 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_3O4H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4H-query.scw
PDB file :
Tito_Scwrl_3O4H.pdb
: