Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHPTPRLAAALLAGSGLGWPLLAQADLVEDSHASLELRNFYFNRDFRQSGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSGSGSGGTGLLPADGSAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSA-NRIGGRSDAFDFAGGDYRLTPALT-ASLHQGRLKDIYRQTFAGLVHTLDLGGQRSLKSDLRFARASEDGGFR--ELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAG-SDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVA-RGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFAND--LDENRLILSYSLALW |
| 3SZD Chain:B ((9-396)) | --------------------------FLEDAKASLTARNFHLHRNFVG----GKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLDGG------------------ADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPL-GDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGSNTRFDENRLIVSYPLSLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21347 for 2801 contacts (-7.6/contact) +
2D Compatibility (PS) -36229 + (NN) 2935 + (LL) 592
1D Compatibility (HY) -25600 + (ID) 8200
Total energy: -87849.0 ( -31.36 by residue)
QMean score : 0.182
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