Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEYLPTSTANGLPHNLQRGERLASIGAGLVLAGFGLARGGLPGACKAVAGGLLVSRGLSGHCHVKGLLNEPREELQLLREE--VQHLTRRLQRLQERQRDDSRQDAALDAELPPNLP
1NT2 Chain:B ((93-142))
-------------------------------------------------------------------MLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIEEVMEKIAPNMT
General information:
TITO was launched using:
RESULT:
Template:
1NT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8508 for 206 contacts (41.3/contact) +
2D Compatibility (PS) -5504 + (NN) -3756 + (LL) 2516
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -2036.0 ( -9.88 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1NT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NT2-query.scw
PDB file :
Tito_Scwrl_1NT2.pdb
: