Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKNTICLWYDSAALEAATFYAETFPDSAVLAVHRAPGDYPSGKEGDVLTVEFRVMGIPCLGLNGGPAFRHSEAFSFQVATDDQAETDRLWNAIVD--------NGGE---------ESACGWCRDKWGISWQITPRVLSEAIASPDRAAARRAFEAMMTMGRIDIATIEKAFKG
1XRK Chain:A ((5-121))
--TSAVPVLTAR-DVAEAVEFWTDRLGFSRVFV-E--D--------D---FAGVVRDDVTLFISAVQDQV-VPDNTQAWVWVR---GLDELYAEWSEVVSTNFRDASGPAMTEIVEQPWGREFALRDPAGNCVHFVAE--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1XRK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51325 for 689 contacts (-74.5/contact) +
2D Compatibility (PS) -11062 + (NN) -6118 + (LL) 4408
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -66347.0 ( -96.29 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_1XRK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XRK-query.scw
PDB file :
Tito_Scwrl_1XRK.pdb
: