Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAVPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEALKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQRAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEEIRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETIIRHCERQGWDV
3AKD Chain:A ((4-208))
------IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQ--AEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV--PPPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQAYEEV-----LRDLLRRD------SA----PAPDALVLDTGGMTLDEVVAWVLAHIRR-----
General information:
TITO was launched using:
RESULT:
Template:
3AKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133862 for 1648 contacts (-81.2/contact) +
2D Compatibility (PS) -21729 + (NN) -13728 + (LL) 1228
1D Compatibility (HY) -15600 + (ID) 4200
Total energy: -187891.0 ( -114.01 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_3AKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKD-query.scw
PDB file :
Tito_Scwrl_3AKD.pdb
: