Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTG---GFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRN--GFADVPSDDVVILSAKRL
2OJU Chain:A ((9-160))
----------------------------VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHL-----DMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI------
General information:
TITO was launched using:
RESULT:
Template:
2OJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66106 for 1097 contacts (-60.3/contact) +
2D Compatibility (PS) -15235 + (NN) 694 + (LL) 3596
1D Compatibility (HY) -11200 + (ID) 2650
Total energy: -90901.0 ( -82.86 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2OJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OJU-query.scw
PDB file :
Tito_Scwrl_2OJU.pdb
: