Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MEEAGFGP--GRSNMHTGETLAAAPPARPLRQSRLG----GLSLFLALAGVAIALAVMALALGERIDLSDEN------HLLGLFAALLAVFAVSTCGLVLGLAGLLRRSRKRHLALAGIVLNLSCLLWGWHALSTAAAAILMVLGQTGLSFLSALAVLFGMIFFRQA
2QZB Chain:A ((39-191))
TKVSEQGVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGGTI-SRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKA-AVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNW---------------------KVSKIIWRR-
General information:
TITO was launched using:
RESULT:
Template:
2QZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104654 for 918 contacts (-114.0/contact) +
2D Compatibility (PS) -12754 + (NN) 10924 + (LL) 2448
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -107186.0 ( -116.76 by residue)
QMean score : 0.114
(partial model without unconserved sides chains):
PDB file :
Tito_2QZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QZB-query.scw
PDB file :
Tito_Scwrl_2QZB.pdb
: