Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTSHLIRIALPGALAAALLASQVSQAADLVPPPGYYAAVGERKGSAGSCPAVPPPYTGSLVFTSKYEGSDSARATLNVKAEKTFRSQIKDITDMERGATKLVTQYMRSGRDGDLACALNWMSAWARAGALQ-SDDF--------------NHTGKSMRKWALGSLSGAYMRLKFSSSRPLAAHAEQSREIEDWFARLGTQVVRDWSGLP-LKKINNHSYWAAWSVMSTAVVTNRRDLFDWAVSEF--KVAANQVDEQGFLPNELKRRQRALAYHNYALPPLAMIAAFAQVNGVDLRQE---NHGALQRLAERVMKGVDD-EETFEEKTGEDQDMTDLKVDNKYAWLEPYCALYRCEPKMLEAKKDREPFNSFRLGGEVTRVFSREGGS |
| 3NNB Chain:A ((81-331)) | -----------------------------------------------------------------PYIRKDG---QRNPELDKL---DRNKLGDMSKAVTTLGLAYYFSGDEKYAQKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDI-YSFTEMIDAMTLMENSKAFT----PKVKKGMKEWFTQLVEWMQTSPVAAEEQRAKNNHGLAYDVQLTAYALYTGNQDLAMKTIQEFPEKRLFAQIEPDGKQPLELAR-TTALGYTIFNLGHMLDMCSIASTLGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQ------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NNB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52000 for 1707 contacts (-30.5/contact) +
2D Compatibility (PS) -24243 + (NN) -6941 + (LL) 7876
1D Compatibility (HY) -7200 + (ID) 2100
Total energy: -84608.0 ( -49.57 by residue)
QMean score : 0.430
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