Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------------------------MKAYD-----IEIVNDAAHAGEANHGWCFGLPPGIRPEQWPLDP-DTGYPLMHGFTLLLPEDYRVHGPEIVALSFFSLAPDQNDGGPTSVDGIRE-------MLIDPPAQPPAEAE-LRPFWEAGRNSH--PRLHRMED-------------ILGGAYALILLD------AAEFSGA-PCQPRA---LPAGNPLLAQTEPPQW----LEAGSAASFVPD---WAE-DDYYLLRALGGRPAAGHQQRYPLRWTARAQ----DPNAGVVPSEY----------GDGGYQLPHYWLDG-------KIERDNYREHPWVEGHLPNHIGGTMR---------PVQGV-------PEMSPFYVEFEEYLGGYNFGGGNAQLDFRDMRFDWACG------------ |
| 4Q6O Chain:A ((21-437)) | MIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFLMHYSVLKGLVEVVPVLNKPSMLRNHR--GLYGDMNRKFAALDKNDPEYPTIQEIKSLIAK------PSIDAVLHLHDGGGYYR--PVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAIEGLLNQLNIPFKRDFDLNPNSVHALINDKNLWAKISSLPKMPLFNLRP---KLNHFPLPHNTKIPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDN--KDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIKFKDFQKRFSLDKQE-----RIYRIEFYKNNAFSGMILVKFV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q6O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -21515 for 1741 contacts (-12.4/contact) +
2D Compatibility (PS) -30244 + (NN) -14673 + (LL) 828
1D Compatibility (HY) -17200 + (ID) 3050
Total energy: -85854.0 ( -49.31 by residue)
QMean score : 0.017
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