Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPLMHRFHSFVAASAVAIALCVGTAHAGLIAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKAPLPTDRESLFWLNILEVPPRDEDENNA---LQFSFRSRFKLFFRPSQLKSV-DSAAGKLQWKFLESGGAGKKTVVQVNNPTPYYVSFASVELIVDGRVMSVGKGMVAPFSTKEFDWQGNPKNMEAASVRYEVINDYGGRNTHDRALGK
2CO7 Chain:B ((19-213))
----------------------------------TRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKSSP-----APFLVMPPLFRLEANQQSQLRIVRTGGDMPTDRETLQWVCIKAVPPE-------TLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRW--VETGNK-----LKVENPTPFYMNLASV--TVGGKPIT-GLEYVPPFADKTLN---------HGDIEWRVITDFGGES--------
General information:
TITO was launched using:
RESULT:
Template:
2CO7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80526 for 1195 contacts (-67.4/contact) +
2D Compatibility (PS) -19027 + (NN) -11158 + (LL) 5020
1D Compatibility (HY) -14000 + (ID) 3450
Total energy: -123141.0 ( -103.05 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2CO7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CO7-query.scw
PDB file :
Tito_Scwrl_2CO7.pdb
: