Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRGRKILTWSLASLVLLLAALVVFIATFDWNLIKPTLNEKVSAALNRPFAINGNLAVAWRREEGEEGWRAWIPWPRFSAEDITLGNPEWTAGKTKASEFASLERIEFRLAPLPLLWQTIRIPQIKLTQPRAELLRLADGRANWDFDLPASDSDEPSAWQLDIREIGFDKGSVSLD----DQRLKTRLEVLVDPLGKPVPFGQLAGKALATGDAANAQDYVFGWKVKGTYKGQALAGSGKVGGMLALQDASKP-------------FPLQAEVSAGSTRAAVV-GTLTDPLNLGALDLRLKLSGTSMANLYPLTGITLPDTPAYSTDGHLLARLKEEGGALFRYENFNGKVGASDLHGSLTFVARQPRPKLSGKLTSEQLRFA---------DLGPLIGADSNAEKQKRGQTSRQPGDKVLPVEEFRTERWRDMDADVEFTGKRIVHSDQLPISDLYTHLVLNDGLLRLEPLRFGVAGGKLESD--------------------IRLDGGKQPMQSRVKMSARGFKLKQLFPGFAPMQTSFGELNGDASLSGSGNSVAKILGGADGELKMLINDGAISKGLTEIAGLNVGNYLVTKLFG-------------DDEVKINCAAADFGLQKGLMTSRLFVFDTENALVN------------VDGTVNFANEKLDLDVTPHSKGLRIFSLRSPLYVRGTFAKPD--------------AGVHAG-----PLVARGAGMIALGVTVGPAASLLALVAPSKSDDNQCTALLQRMRLPAKVPAGKR--------------------------- |
| 3UCP Chain:A ((45-844)) | ---GLDISQATTLKATLEDVKIDNGTVSVDIVLTNAN-GVPVTGLEQYAQINAIGLGIAKLTPESGKG-YKTPQWVSYINSVKAADPARSLANYSYTDGKDSAGNPITKEVKFTP--GDAIQANIESSCKTTCLTVVDSGVYRYTFQTNLSTLPAIEGLDLTYDPTLIHRITLELQTDGSKDAKLVNSHIDFLPSDNFRVAKETETRTVVDLEANCIKCHSTNYSDTSSTAKPLALHGGRRIGIANCQVCHTSYSKDPETGSPLDMGAMVHAIHKGTYAMVGYSGTAYDFSGTMAKAAAESGYPQYREGKDVSERVTLPVSIGNCQSCHSTDDKGPVDAASFKHHKGLACASCHMSGFNPVDNSEWLTPPEGQKDRGFVGNYFHYYATPEIDGIPGVNLVHVFQNGGCASCHAEQGEEGSAKYHLAKANATKLLRTEYAYKLENGTFDVAKGELTFTVNWHSDVAPHQDPKVKEFWVSLTAFNGTEYTMGPRPSNGTLGRSENRISVNLAKVETNANLTAVPNGSKVTYTLTGIKAVIGTSSVPYKQIVSIGKGFMDGKLLICANSAELDPTMDAAIDCSNTEAPIYEVIVGSNKASFSADASNVTARSIVISEAKCANCHGEKADFSASHALTHAADKPDNSCGTCHSAVPNTAVALADGSCVACHNGAPAHSKKPFERGFDFKVMIHQIHADTRSVRRLTTDAATFPENPANCAACHDKGQLSLATLGNKPAFLASTGEYSPTVAACASCHATTATDSAVIGHFETNGGVYNAAAGTYTPGSETCATCHGEGKSFGVDKVHPVKY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UCP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 56985 for 5094 contacts (11.2/contact) +
2D Compatibility (PS) -70610 + (NN) -7009 + (LL) 1024
1D Compatibility (HY) 25200 + (ID) 3500
Total energy: 2090.0 ( 0.41 by residue)
QMean score : 0.061
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