Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAK--DG--FVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2Y88 Chain:A ((3-240))
LILLPAVNVVEGRAVRLVQGKAGSQTEYGS-AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNHELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGW-ETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALA-------
General information:
TITO was launched using:
RESULT:
Template:
2Y88.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -202028 for 2102 contacts (-96.1/contact) +
2D Compatibility (PS) -25544 + (NN) -12349 + (LL) 448
1D Compatibility (HY) -16000 + (ID) 3950
Total energy: -259423.0 ( -123.42 by residue)
QMean score : 0.682
(partial model without unconserved sides chains):
PDB file :
Tito_2Y88.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y88-query.scw
PDB file :
Tito_Scwrl_2Y88.pdb
: