Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGAAAKLAFAVFLISCSSGAILGRSETQECLFFNANWEKDRTNQTGVEPCYGDKDKRRHCFATWKNISGSIEIVKQGCWLDDINCYDRTDCVEKKDSPEVYFCCCEGNMCNEKFSYFPEMEVTQPTSNPVTPKPPYYNILLYSLVPLMLIAGIVICAFWVYRHHKMAYPPVLVPTQDPGPPPPSPLLGLKPLQLLEVKARGRFGCVWKAQLLN------------------EYVAVKIFPIQDK----QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN-----VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVV---VHKKKRPVLRDYWQKHAG-MAMLCETIEECWDHDAEARLSAGCVGERITQMQRLTNIITTEDIVTVVTMVTNVDFPPKESSL |
| 4BKJ Chain:A ((10-301)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRLRFKEKLGEGQFGEVHLCEVDSPQDLVSLDFPLNVRKGHPLLVAVKILRPDATKNARNDFLKEVKIM--SRLKDPNIIRLLGVCVQDD----PLCMITDYMENGDLNQFLSAHQLEDPTISYPMLLHVAAQIASGMRYLATL----------NFVHRDLATRNCLVGENFTIKIADFGMSRNLYAGDYY----RAVLPIRWMAWECILMGK-FT----TASDVWAFGVTLWEVLMLCRA---------QPFGQ-----LTDEQVIENAGEFFRDQGRQVYL---SRPPACPQGLYELMLRCWSRESEQRPPFSQLHRFLAEDALNTV-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114831 for 1851 contacts (-62.0/contact) +
2D Compatibility (PS) -25540 + (NN) -5623 + (LL) 14020
1D Compatibility (HY) -20000 + (ID) 3650
Total energy: -155624.0 ( -84.08 by residue)
QMean score : 0.369
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