Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQNQFVLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIAKS
1XEM Chain:A ((1-164))
-SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL----
General information:
TITO was launched using:
RESULT:
Template:
1XEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97409 for 1278 contacts (-76.2/contact) +
2D Compatibility (PS) -17488 + (NN) -4713 + (LL) 592
1D Compatibility (HY) -19600 + (ID) 5400
Total energy: -144018.0 ( -112.69 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1XEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEM-query.scw
PDB file :
Tito_Scwrl_1XEM.pdb
: