Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | METNFSTPLNEYEEVSYESAGYTVLRILPLVVLGVTFVLGVLGNGLVIWVAGFRMTRTVTTICYL-NLALADFSFTATLPFLIVSMAMGEKWPFGWFLCKLIHIVVDINLFGSVFLIGFIALDRCICVLHPVWAQNHRTVSLAMKVIVGPWILALVLTLPVFLFLTTVTIPNGDTYCTFNFASWGGTPEERLK----------VA------ITMLTARGIIRFVIGFSLPMSIVAICYGLIA------------------------AKIHKKGMIKSSRPLR-----VLTAVVASFFICWFPFQLVALLGTVWLKEML-------------FYGKYKIIDILVNPTSSLAFFNSCLNPMLYVFVGQDFRERLIHSLPTSLERALSEDSAPTNDTAANSASPPAETELQAM |
4XNV Chain:A ((53-382)) | ---------------------------LPAVYI-LVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KSLGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITC------YDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVC-GYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHV---MKTMNLRARLDFQTPAMCAFNDRVYATYQV-------TRGLASLNSCVNPILYFLAGDTFRRR--------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261137 for 1888 contacts (-138.3/contact) +
2D Compatibility (PS) -27146 + (NN) -9449 + (LL) 5524
1D Compatibility (HY) -30000 + (ID) 4250
Total energy: -326458.0 ( -172.91 by residue)
QMean score : 0.210
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