Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEFVLLGFSDIPNLHWMLFSIFLLMYLMILMCNGIIILLIKI---HPALQTPMYFFLSNFSLLEICYVTIIIPRMLMDIWTQKGNISLFA---CATQMCFFLMLGGTECLL-LTVMAYDRYVAICKPL-QYPLVMNHKV------------CIQLIIASWTITIPVVIGETCQI-FLLPFCGTNTINHFFCDIPPILKLACGNIFVNEITVHVVAVVFITVPFLLIVVSYGKIISNILKLSSARGKA----KAFSTCSSHLIVVILFF------GAGTITYLQPKPHQFQRMGKL---ISLFYTILIPTLNPIIYTLRNKDIMVALRKLLAKLLT |
2PED Chain:A ((38-313)) | ---------------WQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF---MVFGGFTTTLYTSLHGYFVFGPTGCNLE-GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETN----------------------NESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI--FTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PED.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -224933 for 1781 contacts (-126.3/contact) +
2D Compatibility (PS) -24201 + (NN) -3080 + (LL) 3056
1D Compatibility (HY) -6400 + (ID) 800
Total energy: -256358.0 ( -143.94 by residue)
QMean score : 0.076
|
|
|